When IT fuses with a branch or discipline of science,
there is origin of a new branch of science. The fusion of IT with biology and
biotechnology is Bioinformatics, the fusion of IT with Geology is Geoinformatics,
Nowadays a new branch is building. It is the fusion of IT and Chemistry. This
new branch is called ‘Chemin-formatics’. In Cheminformatics chemical
information is stored, managed and chemical problems are solved with the help
of Information Technology.
During chemical research a number of new compounds are
synthesized continuously and a lot of information and data is generated. This
continuously expanding chemical information is referred to as a ‘chemical
information explosion’. Therefore, the management, that is, to collect, store,
organize and apply this huge chemical information in a systematic manner is
necessary. Chemin-formatics plays a great role in the management of chemical
information. Cheminformatics is storing and retrieving molecular information
about chemical compounds by computational methods alone.
Cheminformatics has wide applications in drug
discovery. Drug discovery is a very complex research process which is aimed at
making a chemical drug that causes biological effects.
During
drug discovery process researchers test several chemicals on biological systems
and finds out the desired effects generated by the drugs. If the chemicals
(drugs) induce or cause desired biological effects, than are considered as
potential chemical candidates for medicinal drug and are called as Drug Leads.
Once
the drug leads are identified, they are optimized. In optimization beneficial
properties of drug leads are maximized and side-effects are minimized. In this
process addition, removal or replacement of chemical components is involved. A
drug is developed after optimization but it has to be further tested and
studied.
In
earlier days a lot of data regarding a single chemical compound had to be
obtained from books, journals and periodicals. Researchers had to go through
pages after pages. Now everything is available with a click on mouse, thanks to
IT.
Drug
discovery is a very slow and complex process. In Chemistry there are so many
compounds which possess same general molecular formula and have many physical
and chemical properties similarities. These compounds or drug leads belong to a
family or a group of compounds. In a family or in a group of chemicals
(alcohols, acids, bases, ethers, esters etc.) hundreds of chemicals are of
similar physical and chemical properties. To identify a drug-lead from the
family of chemical compounds is very tedious and difficult. It is just like
looking for a needle in hay-stack. Further the drugs have to be tested for
their actions on living beings, that is, the biological response they generate
in biological sample. For this purpose preparation of control sample,
preparation of biological assay, preparation of reagents, monitoring the
reactions, recording the observations and reporting results have to be carried
out.
The entire procedure is very time consuming. But with
the help of cheminformatics these steps have been rendered very simple. One can
not only visualize the reactions but now one can also’ see’ the chemical
reactions! with the help of appropriate chemical software!
Since a large number of molecules have to be processed
for drug synthesis, the methods used must be very fast. To speed up the drug
discovery two techniques of cheminformatics are found to be immensely helpful.
These are Combinatorial Chemistry and High Throughput Screening ( HTS). Both
are data dependent techniques. In combinatorial chemistry entire information of
a drug lead is collected on molecular level and stored. The information may
include the biological effects of drug leads, its synthesis, and the bimolecular
information may include gene databases, protein databases and various other
databases of organic molecules.
Researchers can now access decades of raw data stored
in disparate formats from chemical and biochemical databanks and get useful
results.
In High Throughput Screening the results of several
tests of a drug lead on living beings are compiled, and analyzed.
Cheminformatics is a rapidly developing branch of
chemistry. In the coming days the students who have studied Cheminformatics
will be required not only in India but in foreign countries too! Though the
subject is relatively nascent in India there are some institutes which run some
courses in Cheminformatics and the number is very likely to increase. In
developed countries Cheminformatics is progressing well.
In pharmaceutical companies there is always a
cut-throat competition and cheminformatics will be a fine tool to concur the
world of drugs.
1. The Indian institutes which offer training
programme diploma courses include : Malabar
Christian College, Kozikode.
(1 Year P.G. Diploma in Cheminformatics, Eligibility for the
course is M.Sc. (Chemistry)/ M.Sc. (Bio-informatics)/ M.Pharma)
2. Institute of Cheminformatics Studies, Noida.
3. Department of Chemistry,
Jamia Hamdard Deemed University, New Delhi.
In USA and in Britain several universities have started M.Sc.
courses in cheminformatics. Some of these are -
1. Johns Hopkins University, School of Medicine
2. University of
Manchester - www.manchester.ac.uk.
3. University of Sheffield- www.shef.ac-uk/is/courses
4. University of Indiana- www.informatics.indiana.edu/aademics/chem.asp.
Cheminformatics helps to increase researchers’
efficiency for designing better drugs faster. Chemical, Agrochemical,
Biotechnology and Pharma-ceutical companies are in great need of students with
extensive knowledge of chemistry and computer science, that is,
cheminformatics. It is very crucial for rapid development of new therapeutics
and hence nowadays, unavoidable!
(The author is Lecturer,
P.G. Department of Chemistry, Mahatma Phule College, Pimpri Pune-17)
Author: Shahaji B. More |